| Air to Surface (Bronze) | Complete "Air to Surface" challenge |
| Barrage (Bronze) | Complete "Barrage" challenge |
| Biomech Sweeper (Bronze) | Complete "Biomech Sweeper" challenge |
| Bionically Challenged (Gold) | Complete all challenges in the game. |
| Blood Trial (Bronze) | Complete "Blood Trial" challenge |
| Can you dig it? (Bronze) | Complete "Can you dig it?" challenge |
| Choke on that (Silver) | Kill Groeder -- Kill him for good |
| Close Up (Bronze) | Complete "Close Up" challenge |
| Come Out and Play (Bronze) | Complete "Come Out and Play" challenge |
| Cracker (Bronze) | Complete "Cracker" challenge |
| Crowd Control (Bronze) | Complete "Crowd Control" challenge |
| Down To Earth (Bronze) | Complete "Down To Earth" challenge |
| Drive-by (Bronze) | Complete "Drive-by" challenge |
| End Game (Gold) | Complete the final mission |
| Explosive Delivery (Bronze) | Complete "Explosive Delivery" challenge |
| Fair Fight! (Bronze) | Complete "Fair Fight!" challenge |
| Feel the Beat, Y'all! (Bronze) | Complete "Feel the Beat, Y'all!" challenge |
| Go-Go Bionic! (Platinum) | Complete all other Bionic Commando Trophies |
| Headshot Bonanza (Bronze) | Complete "Headshot Bonanza" challenge |
| I got Hard (Silver) | Finish the game in Hard mode. |
| I went Commando (Gold) | Finish the game in Commando mode. |
| Incoming! (Bronze) | Complete "Incoming!" challenge |
| Jabber Man (Bronze) | Complete "Jabber Man" challenge |
| Kaboom (Bronze) | Complete "Kaboom" challenge |
| Kick In The Back (Bronze) | Complete "Kick In The Back" challenge |
| Leap Up! (Bronze) | Complete "Leap Up!" challenge |
| Let the Dog Out (Bronze) | Complete "Let the Dog Out" challenge |
| Man Locked Up (Bronze) | Complete "Man Locked Up" challenge |
| Nemesis (Bronze) | Complete "Nemesis" challenge |
| Out of the Bush (Bronze) | Complete "Out of the Bush" challenge |
| Poly Cruncher (Bronze) | Complete "Poly Cruncher" challenge |
| Pull! (Bronze) | Complete "Pull!" challenge |
| Receiving End (Bronze) | Complete "Receiving End" challenge |
| Rocket Man (Bronze) | Complete "Rocket Man" challenge |
| Shellshock (Bronze) | Complete "Shellshock" challenge |
| Shoot 'Em Up! (Bronze) | Complete "Shoot 'Em Up!" challenge |
| Slayer (Bronze) | Complete "Slayer" challenge |
| Spence is in the Air (Bronze) | Complete "Spence is in the Air" challenge |
| Stroke of Luck (Bronze) | Complete "Stroke of Luck" challenge |
| Swinger (Bronze) | Complete "Swinger" challenge |
| The Collector (Silver) | Find all collectibles in the game. |
| The Pinball Effect (Bronze) | Complete "The Pinball Effect" challenge |
| The Pitcher (Silver) | Complete "The Pitcher" challenge |
| The River (Bronze) | Complete "The River" challenge |
| Torn Into Pieces (Bronze) | Complete "Torn Into Pieces" challenge |
| Train Wreck (Bronze) | Complete "Train Wreck" challenge |
| Two Hit Wonder (Bronze) | Complete "Two Hit Wonder" challenge |
| Whip 'Em Good (Bronze) | Complete "Whip 'Em Good" challenge |
| Whoo-paah! (Bronze) | Complete "Whoo-paah!" challenge |
| Worthy Foe (Bronze) | Complete "Worthy Foe" challenge |
